[SOLVED] invalid ELF header

lattimro · 01-16-2022, 09:45 AM

I have some corrupted libs if this are the correct term and for example anything apt related fails:

Quote:

Would anybody know how to query how many corrupted files are? I know are 4806 list files but how many are corrupted?

Code:

root@ubuntu:/TEMPLIB# apt purge libportsmf0v5
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
The following package was automatically installed and is no longer required:
  audacity-data
Use 'apt autoremove' to remove it.
The following packages will be REMOVED:
  audacity* libportsmf0v5*
0 upgraded, 0 newly installed, 2 to remove and 1 not upgraded.
After this operation, 16.7 MB disk space will be freed.
Do you want to continue? [Y/n] 
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'libportsmf0v5:amd64' is missing final newline
/usr/bin/gdbus: error while loading shared libraries: /lib/x86_64-linux-gnu/libgmodule-2.0.so.0: invalid ELF header
E: Sub-process /usr/bin/dpkg returned an error code (2)

I am intersted to solve this:

Code:

/usr/bin/gdbus: error while loading shared libraries: /lib/x86_64-linux-gnu/libgmodule-2.0.so.0: invalid ELF header

I hope installing libglib2.0-0 will install a new

Code:

/usr/lib/x86_64-linux-gnu/libgmodule-2.0.so.0
/usr/lib/x86_64-linux-gnu/libgmodule-2.0.so.0.6800.4

as per below:

File list of package libglib2.0-0 in impish of architecture amd64

/usr/lib/x86_64-linux-gnu/glib-2.0/gio-launch-desktop
/usr/lib/x86_64-linux-gnu/glib-2.0/gio-querymodules
/usr/lib/x86_64-linux-gnu/glib-2.0/glib-compile-schemas
/usr/lib/x86_64-linux-gnu/libgio-2.0.so.0
/usr/lib/x86_64-linux-gnu/libgio-2.0.so.0.6800.4
/usr/lib/x86_64-linux-gnu/libglib-2.0.so.0
/usr/lib/x86_64-linux-gnu/libglib-2.0.so.0.6800.4
/usr/lib/x86_64-linux-gnu/libgmodule-2.0.so.0
/usr/lib/x86_64-linux-gnu/libgmodule-2.0.so.0.6800.4
/usr/lib/x86_64-linux-gnu/libgobject-2.0.so.0
/usr/lib/x86_64-linux-gnu/libgobject-2.0.so.0.6800.4
/usr/lib/x86_64-linux-gnu/libgthread-2.0.so.0
/usr/lib/x86_64-linux-gnu/libgthread-2.0.so.0.6800.4
/usr/share/doc/libglib2.0-0/NEWS.gz
/usr/share/doc/libglib2.0-0/README.md
/usr/share/doc/libglib2.0-0/changelog.Debian.gz
/usr/share/doc/libglib2.0-0/copyright
/usr/share/glib-2.0/clean-up-unmanaged-libraries
/usr/share/lintian/overrides/libglib2.0-0

but installing takes me back to:

Code:

dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'libportsmf0v5:amd64' is missing final newline

I understood from previous post that the files are where should be but they are corrupted:

Code:

root@ubuntu:/TEMPLIB# ll /lib/x86_64-linux-gnu/|g libgmod
lrwxrwxrwx    1 root root        26 Oct 12 08:39 libgmodule-2.0.so.0 -> libgmodule-2.0.so.0.6800.4
-rw-r--r--    1 root root     18640 Oct 12 08:39 libgmodule-2.0.so.0.6800.4

If I am correct when I query either one:

Code:

dpkg -V libgmodule-2.0.so.0.6800.4
dpkg: package 'libgmodule-2.0.so.0.6800.4' is not installed

or

Code:

root@ubuntu:/TEMPLIB# dpkg -V libgmodule-2.0.so.0
dpkg: package 'libgmodule-2.0.so.0' is not installed

I do not know for sure if this is the name I should query?

pan64 · 01-16-2022, 09:46 AM

duplicate of https://www.linuxquestions.org/quest...te-4175706439/

lattimro · 01-16-2022, 09:57 AM

Quote:

Originally Posted by pan64

duplicate of https://www.linuxquestions.org/quest...te-4175706439/

sorry, I was thinking to break apart in sections that thread because is getting to large and is harder to follow by members.

lattimro · 01-16-2022, 10:53 AM

I replaced

Quote:

/var/lib/dpkg/info/libglib2.0-0:amd64.list

with the right content

Quote:

/usr/lib/x86_64-linux-gnu/glib-2.0/gio-launch-desktop
/usr/lib/x86_64-linux-gnu/glib-2.0/gio-querymodules
/usr/lib/x86_64-linux-gnu/glib-2.0/glib-compile-schemas
/usr/lib/x86_64-linux-gnu/libgio-2.0.so.0
/usr/lib/x86_64-linux-gnu/libgio-2.0.so.0.6800.4
/usr/lib/x86_64-linux-gnu/libglib-2.0.so.0
/usr/lib/x86_64-linux-gnu/libglib-2.0.so.0.6800.4
/usr/lib/x86_64-linux-gnu/libgmodule-2.0.so.0
/usr/lib/x86_64-linux-gnu/libgmodule-2.0.so.0.6800.4
/usr/lib/x86_64-linux-gnu/libgobject-2.0.so.0
/usr/lib/x86_64-linux-gnu/libgobject-2.0.so.0.6800.4
/usr/lib/x86_64-linux-gnu/libgthread-2.0.so.0
/usr/lib/x86_64-linux-gnu/libgthread-2.0.so.0.6800.4
/usr/share/doc/libglib2.0-0/NEWS.gz
/usr/share/doc/libglib2.0-0/README.md
/usr/share/doc/libglib2.0-0/changelog.Debian.gz
/usr/share/doc/libglib2.0-0/copyright
/usr/share/glib-2.0/clean-up-unmanaged-libraries
/usr/share/lintian/overrides/libglib2.0-0

also in the same folder replaced corrupted files: bin.list, cil.list, data.list

also replaced corrupted file: libportsmf0v5:amd64.list

Code:

root@ubuntu:/var/lib/dpkg/info# ll /lib/x86_64-linux-gnu|g libport
lrwxrwxrwx    1 root root        21 Jul 30  2020 libportaudio.so.2 -> libportaudio.so.2.0.0
-rw-r--r--    1 root root    200288 Jul 30  2020 libportaudio.so.2.0.0
lrwxrwxrwx.   1 root root        19 Mar 22  2020 libportSMF.so.0 -> libportSMF.so.0.0.0
-rw-r--r--.   1 root root    149920 Mar 22  2020 libportSMF.so.0.0.0
root@ubuntu:/var/lib/dpkg/info# ll /lib/x86_64-linux-gnu|g libgmod
lrwxrwxrwx    1 root root        26 Oct 12 08:39 libgmodule-2.0.so.0 -> libgmodule-2.0.so.0.6800.4
-rw-r--r--    1 root root     18640 Oct 12 08:39 libgmodule-2.0.so.0.6800.4

Code:

root@ubuntu:/var/lib/dpkg/info# ldd /usr/lib/x86_64-linux-gnu/libportSMF.so.0
	linux-vdso.so.1 (0x00007fff0f957000)
	libstdc++.so.6 => /lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007fe56e279000)
	libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fe56e195000)
	libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fe56df6d000)
	libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007fe56df53000)
	/lib64/ld-linux-x86-64.so.2 (0x00007fe56e4db000)
root@ubuntu:/var/lib/dpkg/info# ldd /usr/lib/x86_64-linux-gnu/libgmodule-2.0.so.0
	not a dynamic executable

Code:

root@ubuntu:/var/lib/dpkg/info# readelf -a /lib/x86_64-linux-gnu/libgmodule-2.0.so.0|grep NEEDED
readelf: Error: Not an ELF file - it has the wrong magic bytes at the start
root@ubuntu:/var/lib/dpkg/info# ll /lib/x86_64-linux-gnu|g libport
lrwxrwxrwx    1 root root        21 Jul 30  2020 libportaudio.so.2 -> libportaudio.so.2.0.0
-rw-r--r--    1 root root    200288 Jul 30  2020 libportaudio.so.2.0.0
lrwxrwxrwx.   1 root root        19 Mar 22  2020 libportSMF.so.0 -> libportSMF.so.0.0.0
-rw-r--r--.   1 root root    149920 Mar 22  2020 libportSMF.so.0.0.0

pan64 · 01-17-2022, 01:14 AM

what I see you need to replace this file: /usr/lib/x86_64-linux-gnu/libgmodule-2.0.so.0.6800.4

lattimro · 01-17-2022, 12:15 PM

Quote:

Originally Posted by pan64

what I see you need to replace this file: /usr/lib/x86_64-linux-gnu/libgmodule-2.0.so.0.6800.4

I know that but I can't. That is what I tried to install:

Code:

dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'libportsmf0v5:amd64' is missing final newline

Do you have other option?

pan64 · 01-18-2022, 12:35 AM

I told you. unpack the deb package and manually replace that file.

lattimro · 01-18-2022, 04:49 AM

Quote:

Originally Posted by pan64

I told you. unpack the deb package and manually replace that file.

I just tried to install it and failed but I think I understand what you said now. This is something I have not done. I will extract the file(s) and replace them.
Is this the same thing as replacing the file from other stable filesystem? Because these corrupted files could be replaced once from one /usr/lib/x86_64-linux-gnu/ location to another? Just a thought. Thanks so much, I see the light again.

pan64 · 01-18-2022, 05:50 AM

it is almost the same, just 1. save the old file to be able to restore it. 2. be careful about the file you pick (if that is really compatible)

lattimro · 01-18-2022, 08:38 AM

Quote:

Originally Posted by pan64

it is almost the same, just 1. save the old file to be able to restore it. 2. be careful about the file you pick (if that is really compatible)

1. save the old file to be able to restore it.
why need to restore (eventually) when was corrupted and just replaced with a presumable good one?

I extracted libgmodule-2.0.so.0.6800.4 from deb and installed in /usr/lib/i386-linux-gnu/libgmodule-2.0.so.0.6800.4 and run again:

Code:

root@ubuntu:/TEMPLIB# dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'libglib2.0-0:amd64' is missing final newline

so looking for itself? Confusion again...

before was looking after:

Code:

dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'libportsmf0v5:amd64' is missing final newline

pan64 · 01-18-2022, 08:43 AM

no, that is the *.list file in /var/lib/dpkg/info. You might need to remove and/or replace it too.

lattimro · 01-18-2022, 08:47 AM

Quote:

Originally Posted by pan64

no, that is the *.list file in /var/lib/dpkg/info. You might need to remove and/or replace it too.

OK, then I did replace .list with proper content because was corrupted (see #4)

OK I fixed that: the .list content was read by nano but not by cat, less, more. I rm and recreated it and is read correctly by by cat, less, more and nano.

now we passed that and next:

Code:

dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'libglib2.0-bin' is missing final newline

did the same and fixed, now the next is:

Code:

dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'rpcbind' contains empty filename

this is how rpcbind.list looks like:

PHP Code:



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I fixed so far about 10 and can't find libimagequant0:amd64, however I found

File list of package libimagequant0 in impish of architecture amd64

PHP Code:



/usr/lib/x86_64-linux-gnu/libimagequant.so.0
/usr/share/doc/libimagequant0/changelog.Debian.gz
/usr/share/doc/libimagequant0/copyright
/usr/share/doc/libimagequant0/examples/example.c.gz

which I replaced content but still looking for libimagequant0:amd64

pan64 · 01-18-2022, 09:36 AM

I can recommend you to use ubuntu packages search
https://packages.ubuntu.com/impish/libimagequant0
libimagequant0 in impish of architecture amd64 is libimagequant0:amd64

lattimro · 01-18-2022, 09:49 AM

Quote:

Originally Posted by pan64

I can recommend you to use ubuntu packages search
https://packages.ubuntu.com/impish/libimagequant0
libimagequant0 in impish of architecture amd64 is libimagequant0:amd64

Thanks for confirming! That is exactly what I used and populated with this content:

Code:

/.
/usr/lib/x86_64-linux-gnu/libimagequant.so.0
/usr/share/doc/libimagequant0/changelog.Debian.gz
/usr/share/doc/libimagequant0/copyright
/usr/share/doc/libimagequant0/examples/example.c.gz

BTW, I Scaned all the directories again. Please have a look maybe is something I missed:

Code:

ldconfig -v | head
/sbin/ldconfig.real: Can't stat /usr/local/lib/i386-linux-gnu: No such file or directory
/sbin/ldconfig.real: Path `/usr/lib/i386-linux-gnu' given more than once
(from /etc/ld.so.conf.d/i386-linux-gnu.conf:4 and /etc/ld.so.conf.d/i386-linux-gnu.conf:3)
/sbin/ldconfig.real: Can't stat /usr/local/lib/i686-linux-gnu: No such file or directory
/sbin/ldconfig.real: Can't stat /lib/i686-linux-gnu: No such file or directory
/sbin/ldconfig.real: Can't stat /usr/lib/i686-linux-gnu: No such file or directory
/sbin/ldconfig.real: Path `/usr/lib/x86_64-linux-gnu' given more than once
(from /etc/ld.so.conf.d/x86_64-linux-gnu.conf:4 and /etc/ld.so.conf.d/x86_64-linux-gnu.conf:3)
/sbin/ldconfig.real: Path `/usr/lib32' given more than once
(from /etc/ld.so.conf.d/zz_i386-biarch-compat.conf:3 and /etc/ld.so.conf.d/zz_i386-biarch-compat.conf:2)
/sbin/ldconfig.real: Path `/lib/x86_64-linux-gnu' given more than once
(from <builtin>:0 and /etc/ld.so.conf.d/x86_64-linux-gnu.conf:3)
/sbin/ldconfig.real: Path `/usr/lib/x86_64-linux-gnu' given more than once
(from <builtin>:0 and /etc/ld.so.conf.d/x86_64-linux-gnu.conf:3)
/sbin/ldconfig.real: Path `/usr/lib' given more than once
(from <builtin>:0 and <builtin>:0)
/sbin/ldconfig.real: /lib/i386-linux-gnu/ld-linux.so.2 is the dynamic linker, ignoring

/usr/lib/x86_64-linux-gnu/libfakeroot: (from /etc/ld.so.conf.d/fakeroot-x86_64-linux-gnu.conf:1)
	libfakeroot-0.so -> libfakeroot-tcp.so
/lib/i386-linux-gnu: (from /etc/ld.so.conf.d/i386-linux-gnu.conf:3)
	libanl.so.1 -> libanl.so.1
	libBrokenLocale.so.1 -> libBrokenLocale.so.1
	libjbig.so.0 -> libjbig.so.0
	libgobject-2.0.so.0 -> libgobject-2.0.so.0.6800.4
	libXi.so.6 -> libXi.so.6.1.0
	libcrypto.so.1.1 -> libcrypto.so.1.1
	libxcb-render.so.0 -> libxcb-render.so.0.0.0

OK fixed (rm .list and recreated), move on ... could be hundreds ... keep going ...

Code:

root@ubuntu:/TEMPLIB# dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'mesa-utils' is missing final newline
root@ubuntu:/TEMPLIB# ^C
root@ubuntu:/TEMPLIB# nano /var/lib/dpkg/info/mesa-utils.list
root@ubuntu:/TEMPLIB# dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'x11-utils' is missing final newline
root@ubuntu:/TEMPLIB# ^C
root@ubuntu:/TEMPLIB# nano /var/lib/dpkg/info/x11-utils.list
root@ubuntu:/TEMPLIB# dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'libisl23:amd64' is missing final newline
root@ubuntu:/TEMPLIB# nano /var/lib/dpkg/info/libisl23:amd64.list
root@ubuntu:/TEMPLIB# dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'gfortran-11' is missing final newline
root@ubuntu:/TEMPLIB# nano /var/lib/dpkg/info/gfortran-11.list
root@ubuntu:/TEMPLIB# dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'g++-11' is missing final newline
root@ubuntu:/TEMPLIB# nano /var/lib/dpkg/info/g++-11.list
root@ubuntu:/TEMPLIB# dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'compiz-gnome' is missing final newline

libapache2-mod-php7.4 not available for impish ... move on

some i386 are requested. Why? I satisfied the requests anyway ...

this I cannot fix. I removed and created a new file list and no go

Code:

dpkg -i libglib2.0-0_2.68.4-1ubuntu1_amd64.deb
dpkg: unrecoverable fatal error, aborting:
 files list file for package 'libvlc-bin:amd64' is missing final newline

fixed, move on ...

CAN'T find i3xrocks ('fixed' with an empty file list).

so far 30-40 replaced

pan64 · 01-18-2022, 12:15 PM

you have probably https://packages.ubuntu.com/impish/l...he2-mod-php8.0, I don't really know if the php7.4 version needed. You can try to copy from another host. or remove it completely. Or probably this: https://packages.ubuntu.com/focal/libapache2-mod-php7.4 (unpack and take that file from here).