Hello-
I have download a 'package' that is meant to be used for genetic research and such...Anyway, i have downloaded the file and when i try to execute the included example, it says cannot execute binary file. i've tried all sorts of permissons/re-downloading/etc. I've pastted the attached readme that I followed EXACTLY, but am still gettin an error.
Here is where i downloaded the file :
http://genetics.cs.ucla.edu/eminim/
here is the readme that comes with it:
EMINIM : Expectation-Maximized INtegrative IMputation
0. GETTING STARTED
0.1 Uncompress the package
$ tar xzvf eminim-1-beta.tar.gz
$ cd eminim-1-beta
0.2 Use sample input file to test the software
0.2.1 For human imputation
$ bin/eminim-1-beta -g human/genmap-human.txt -P 0.05 -a rst.h.all -y rst.h.typed -v human/haplos-human.txt human/genos-human.txt
0.2.2 For inbred imputation
$ bin/eminim-1-beta -i -t 1e-6 -l 1e-20 -u 1e-3 -a rst.m.all -y rst.m.typed -v mouse/haplos-mouse.txt human/genos-mouse.txt
1. USAGE AND OPTIONS
1.1. Usage:
eminim-1-beta [options] [haplo_file] [geno_file]
1.2. Required Parameters:
[haplo_file] : input file for reference haplotypes
[geno_file] : input file for target genotypes
(The format of these input files are described in the next sections)
1.3. Selective Options:
-i : inbred/haploid imputation (default: diploid imputation)
-g [genetic_map_file] : use genetic map instead of physical map
-P [fraction of physical map] : combine both physical and genetic map according the scale of genetic map
-t [trans_rate] : intitial transition parameters (default: 3.806)
-l [theta_lower] : lower bound of the transition parameters (default: 0.2)
-u [theta_upper] : upper bound of the transition parameters (default: 20)
-m [mut_rate] : initial mutation parameters (default : 7.78e-4)
-U [mu_upper] : upper bound of mutation parameters (default : 1)
-L [mu_lower] : lower bound of mutation parameters (default : 1e-5)
-N : Do not learn transitional parameters
-M : Do not learn mutational parameters
-T [rel_tol] relative tolerance parameter (default : 1e-3)
-n [max_niter] : maximum number of iterations (default : 100)
-a [aoutfile] : output filename fo
.......and it continues...